NanoShaper  0.7.2
NanoShaper is a tool able to triangulate and inspect an arbitray triangulated surface or several types of molecular surfaces
CoulombicSurface Member List
This is the complete list of members for CoulombicSurface, including all inherited members.
accurateTriangulation (defined in Surface)Surface [protected]
activeCubesSurface [protected]
allocIntersectionsMatrices()Surface [protected]
allocNormalsMatrices()Surface [protected]
applyMultidielectric()Surface [protected]
approximateNormals(vector< int > &appNormals, bool doOnlyList)Surface [protected]
AUX_GRID_DIM (defined in MeshSurface)MeshSurface [protected]
AUX_GRID_DIM_2D (defined in MeshSurface)MeshSurface [protected]
backupStatus()Surface
bgp_typeSurface [protected]
build()CoulombicSurface [virtual]
buildAtomsMap()Surface [protected]
buildAuxiliaryGrid()MeshSurface [protected]
buildSternLayer()Surface [protected]
cav2out()Surface [virtual]
checkDuplicatedVerticesSurface [protected]
checkDuplicates()MeshSurface [protected]
classifyCube(double *vertexValues, double isolevel)Surface [inline, protected]
clear()CoulombicSurface [virtual]
computeNormalsMeshSurface [protected]
CoulombicSurface()CoulombicSurface
CoulombicSurface(DelPhiShared *ds)CoulombicSurface
CoulombicSurface(ConfigFile *cf, DelPhiShared *ds)CoulombicSurface
deduceFormat()Surface [protected]
delphi (defined in Surface)Surface [protected]
delta_accurate_triangulation (defined in Surface)Surface [protected]
difference(Surface *)Surface
disposeAtomsMap()Surface [protected]
faceMatrix (defined in MeshSurface)MeshSurface [protected]
fillCavities(double vol=0, bool silent=false)Surface [virtual]
fillCavitiesFlag (defined in Surface)Surface [protected]
filterCavities(bool modStatus=false)Surface [virtual]
floodFill(int ix, int iy, int iz, int idold, int idnew)Surface [protected]
floodFill2(int ix, int iy, int iz, int idold, int idnew)Surface [protected]
floodFill3(pair< pair< int, int >, int > ind, pair< int, int > z_limits, pair< int, int > old_new, pair< queue< pair< pair< int, int >, int > > *, queue< pair< pair< int, int >, int > > * > queues, queue< pair< pair< int, int >, int > > *in_queue)Surface [protected]
floodFill4(int ix, int iy, int iz, int idold, int idnew)Surface [protected]
getArea()Surface [virtual]
getCavities(int idStart=STATUS_POINT_TEMPORARY_OUT)Surface [virtual]
getCavitiesAtoms()Surface
getCheckDuplicatedVertices() (defined in Surface)Surface [inline]
getComputeNormals() (defined in Surface)Surface [inline]
getInsideCode() (defined in Surface)Surface [inline, virtual]
getInsidness(int i, int j, int k, int vertInd)Surface [protected]
getIsoValue() (defined in CoulombicSurface)CoulombicSurface
getKeepWellShapedCavities() (defined in Surface)Surface [inline]
getLoadBalancing() (defined in Surface)Surface [inline, virtual]
getNumTriangles() (defined in Surface)Surface [inline, virtual]
getNumVertices() (defined in Surface)Surface [inline, virtual]
getProbeRadius() (defined in Surface)Surface [inline, virtual]
getProjBGP() (defined in Surface)Surface [inline]
getProjection(double p[3], double *proj1, double *proj2, double *proj3, double *normal1, double *normal2, double *normal3)MeshSurface [virtual]
getRandDisplacement() (defined in Surface)Surface [inline, virtual]
getRayIntersection(double p1[3], double p2[3], vector< pair< double, double * > > &intersections, int thdID, bool computeNormals)MeshSurface [inline, virtual]
getSaveMSMS() (defined in Surface)Surface [inline]
getSternLayer() (defined in Surface)Surface [inline]
getSurf(bool fill=false, double vol=0)Surface [virtual]
getTriangles(double *vertexValues, double **vertexPos, double isolevel, int **triangles, int ix, int iy, int iz, int NX, int NY, int NZ)Surface [inline, protected]
getTriangulationFlag() (defined in Surface)Surface [inline]
getVertexAtomsMap() (defined in Surface)Surface [inline]
getVertices(double isolevel, int start_z, int end_z, int jump, vector< coordVec > *, vector< double * > *)Surface [inline, protected]
getVolume()Surface [virtual]
ggrid (defined in Surface)Surface [protected]
gridLoadSurface [protected]
gridMultiMapSurface [protected]
gridTriangleMapMeshSurface [protected]
gridTriangleMap2DMeshSurface [protected]
gscale (defined in Surface)Surface [protected]
gside (defined in Surface)Surface [protected]
gxmin (defined in Surface)Surface [protected]
gymin (defined in Surface)Surface [protected]
gzmin (defined in Surface)Surface [protected]
ind (defined in MeshSurface)MeshSurface [protected]
ind_2d (defined in MeshSurface)MeshSurface [protected]
init()CoulombicSurface [virtual]
init(ConfigFile *cf)CoulombicSurface [virtual]
innerFloodFill(int *start, int *target, short *status1, short *status2, int &maxMoves, bool debug)Surface [protected]
insideSurface [protected]
intersect_triangle(double orig[3], double dir[3], double vert0[3], double vert1[3], double vert2[3], double *t, double *u, double *v)MeshSurface [protected]
intersectionsMatrixAlongXSurface [protected]
intersectionsMatrixAlongYSurface [protected]
intersectionsMatrixAlongZSurface [protected]
intersector(double *volPanel, int nb, int start, int end, int jump, int *numIntersections, packet pack)Surface [protected]
inTriangle(double P[3], double A[3], double B[3], double C[3]) (defined in MeshSurface)MeshSurface [protected]
isAvailableScalarField (defined in Surface)Surface [protected]
isRCbasedSurface [protected]
last_cols_ind (defined in Surface)Surface [protected]
last_nx (defined in Surface)Surface [protected]
last_ny (defined in Surface)Surface [protected]
last_nz (defined in Surface)Surface [protected]
last_rows_ind (defined in Surface)Surface [protected]
linkCavities(short *st1, short *st2)Surface
load(char *fileName)MeshSurface [virtual]
loadMSMS(char *fileName, int numFiles=1)MeshSurface
loadOFF(char *fileName)MeshSurface [protected]
loadPLY(char *fileName)MeshSurface [protected]
MAX_TRIANGLES (defined in MeshSurface)MeshSurface [protected]
MAX_TRIANGLES_2D (defined in MeshSurface)MeshSurface [protected]
MeshSurface()MeshSurface
MeshSurface(DelPhiShared *ds)MeshSurface
MeshSurface(ConfigFile *cf, DelPhiShared *ds)MeshSurface
normalsListSurface [protected]
normalsMatrixAlongXSurface [protected]
normalsMatrixAlongYSurface [protected]
normalsMatrixAlongZSurface [protected]
numTriangles (defined in MeshSurface)MeshSurface [protected]
numVertexes (defined in MeshSurface)MeshSurface [protected]
nxMeshSurface [protected]
nx_2dMeshSurface [protected]
ny (defined in MeshSurface)MeshSurface [protected]
ny_2d (defined in MeshSurface)MeshSurface [protected]
nz (defined in MeshSurface)MeshSurface [protected]
nz_2d (defined in MeshSurface)MeshSurface [protected]
operator-=(Surface &surf2)Surface
panel (defined in Surface)Surface [protected]
planes (defined in MeshSurface)MeshSurface [protected]
point2plane(double p[3], double w[4], double *dist, double proj[3])MeshSurface [protected]
point2triangle(double P[3], double A[3], double B[3], double C[3], double w[4], double *proj, double *dist, double *normal, int planeID, int va, int vb, int vc)MeshSurface [protected]
postRayCasting()MeshSurface [inline, virtual]
preBoundaryProjection()MeshSurface [inline, virtual]
preProcessPanel()MeshSurface [protected, virtual]
preProcessTriangles()MeshSurface [protected]
printSummary()CoulombicSurface [virtual]
probe_radiusSurface [protected]
projBGP (defined in Surface)Surface [protected]
projector(int start, int end)Surface [protected]
providesAnalyticalNormalsSurface [protected]
randDisplacementSurface [protected]
removeBackupStatus()Surface
save(char *fileName)MeshSurface [virtual]
saveMesh(int format, bool revert, const char *fileName)Surface [virtual]
saveMSMS (defined in Surface)Surface [protected]
scalarField (defined in Surface)Surface [protected]
scale (defined in MeshSurface)MeshSurface [protected]
scale_2d (defined in MeshSurface)MeshSurface [protected]
setAuxGrid(unsigned int dim, unsigned int max)MeshSurface [inline]
setAuxGrid2D(unsigned int dim, unsigned int max)MeshSurface [inline]
setCheckDuplicatedVertices(bool cd) (defined in Surface)Surface [inline]
setComputeNormals(bool cn) (defined in Surface)Surface [inline]
setInsideCode(int i) (defined in Surface)Surface [inline, virtual]
setIsoValue(double b) (defined in CoulombicSurface)CoulombicSurface
setKeepWellShapedCavities(bool kwsc) (defined in Surface)Surface [inline]
setLoadBalancing(bool doLoadBalancing) (defined in Surface)Surface [inline, virtual]
setProbeRadius(double probeRadius) (defined in Surface)Surface [inline, virtual]
setProjBGP(bool flag)Surface [inline]
setRandDisplacement(const double r) (defined in Surface)Surface [inline, virtual]
setSaveMSMS(bool m) (defined in Surface)Surface [inline]
setSternLayer(double l) (defined in Surface)Surface [inline]
setTriangulationFlag(bool flag) (defined in Surface)Surface [inline]
setVertexAtomsMap(bool f) (defined in Surface)Surface [inline]
side (defined in MeshSurface)MeshSurface [protected]
side_2d (defined in MeshSurface)MeshSurface [protected]
smoothSurface(const char *fn="triangulatedSurf", bool revert=false)Surface [virtual]
sternLayer (defined in Surface)Surface [protected]
Surface() (defined in Surface)Surface [protected]
Surface(ConfigFile *cf) (defined in Surface)Surface [protected]
surfTypeSurface [protected]
swap2multi(double gxmin, double gymin, double gzmin, double gside, unsigned int ggrid, int *gridMultiMap, int i, int j, int k, int l)Surface [protected]
totalLoad (defined in Surface)Surface [protected]
totalSurfaceArea (defined in Surface)Surface [protected]
totalVolume (defined in Surface)Surface [protected]
tri2Balls()Surface
triangulateSurface(double iso=0.0, const char *fileName="triangulatedSurf", bool revert=false)Surface [virtual]
triangulationKernel(double isolevel, bool revert, int start_z, int end_z, int jump, vector< int * > *localTriList, double *localArea)Surface [inline, protected]
triListSurface [protected]
useLoadBalancing (defined in Surface)Surface [protected]
vdwAccessible(double *p, int &nearest)Surface [protected]
vertexAtomsMap (defined in Surface)Surface [protected]
vertexAtomsMapFlag (defined in Surface)Surface [protected]
vertexInterp(double isolevel, double *p1, double *p2, double valp1, double valp2, double *p)Surface [protected]
vertexTrianglesListMeshSurface [protected]
verticesInsidenessMap (defined in Surface)Surface [protected]
vertListSurface [protected]
vertMatrix (defined in MeshSurface)MeshSurface [protected]
vertNormalsMeshSurface [protected]
wellShapedSurface [protected]
x (defined in MeshSurface)MeshSurface [protected]
xmax (defined in MeshSurface)MeshSurface [protected]
xmax_2d (defined in MeshSurface)MeshSurface [protected]
xmin (defined in MeshSurface)MeshSurface [protected]
xmin_2d (defined in MeshSurface)MeshSurface [protected]
y (defined in MeshSurface)MeshSurface [protected]
ymax (defined in MeshSurface)MeshSurface [protected]
ymax_2d (defined in MeshSurface)MeshSurface [protected]
ymin (defined in MeshSurface)MeshSurface [protected]
ymin_2d (defined in MeshSurface)MeshSurface [protected]
z (defined in MeshSurface)MeshSurface [protected]
zmax (defined in MeshSurface)MeshSurface [protected]
zmax_2d (defined in MeshSurface)MeshSurface [protected]
zmin (defined in MeshSurface)MeshSurface [protected]
zmin_2d (defined in MeshSurface)MeshSurface [protected]
~CoulombicSurface() (defined in CoulombicSurface)CoulombicSurface [virtual]
~MeshSurface() (defined in MeshSurface)MeshSurface [virtual]
~Surface()Surface [virtual]